PhD Position on Cell Imaging Data: The University of Amsterdam (UvA) is inviting applications for a PhD position focused on developing dynamical models for learning from 3D cell imaging data. This position allows you to work at the intersection of computer vision, machine learning, and biomedical imaging, addressing challenges in live-cell 3D microscopy.
PhD Position on Dynamical Models Learning for 3D Cell Imaging Data
Designation
PhD Candidate
Table
| Details | Information |
|---|---|
| Research Area | Computer Vision, Machine Learning, Biomedical Imaging |
| Location | Amsterdam, Netherlands |
| Eligibility/Qualification | MSc in Computer Science, AI, Applied Mathematics, Biomedical Engineering or related field |
| Salary | €3,059 – €3,881 (based on experience) |
| Contract Duration | Temporary contract for 4 years |
| Working Hours | 38 hours per week |
| Application Deadline | 31 August 2025 |
| Starting Date | 1 October 2025 |
Research Area
You will explore advanced techniques in computer vision and machine learning to develop an unsupervised or semi-supervised end-to-end cell tracker, aimed at linking cell pixels over time in 3D environments.
Location
Amsterdam, Netherlands
Eligibility/Qualification
- Minimum Qualification: MSc in Computer Science, AI, Applied Mathematics, Biomedical Engineering, or a related field.
- Preferred Skills:
- Strong background in reinforcement learning, causal learning, or multimodal models.
- Experience with deep learning, graph neural networks, or visual object tracking.
- Familiarity with tools such as PyTorch or JAX.
Description
In this position, you will:
- Develop methods for linking and tracking pixels of cells over long durations.
- Integrate advanced imaging priors and physics-informed constraints.
- Collaborate with interdisciplinary teams, including imaging scientists and immunologists.
- Publish high-impact research and release open-source software.
Benefits
- 232 vacation hours annually
- Holiday allowance (8%) and year-end bonus (8.3%)
- Pension contributions, potential for housing assistance
- Family support for relocating to the Netherlands
How to Apply
Interested candidates should submit an online application including:
- A motivation letter
- Curriculum vitae (max 2 pages)
- Research statement on PhD project approach (max 2 pages)
- Link to the Master thesis or abstract
- Record of Bachelor and Master courses and grades
- List of projects/publications and contact details for at least two academic references
Last Date for Apply
31 August 2025
For further details, please reach out to Dr. Stratis Gavves at E.Gavves@uva.nl or Dr. Andrii Zadaianchuk at a.zadaianchuk@uva.nl.
