PhD Position in Mass Spectrometry-Based Proteomics: The University of Southern Denmark is offering a fully funded PhD position in experimental proteomics, focusing on the innovative exploration of negative ion mode LC-MS/MS peptide analysis. This research aims to broaden our understanding of peptide chemistry and enhance proteome characterization.
PhD Position in Experimental Mass Spectrometry-Based Proteomics
Designation:
PhD Research Fellow
Research Area:
Experimental Proteomics, Mass Spectrometry, Peptide Analysis
Location:
Odense M, Denmark
Eligibility/Qualifications:
- Required:
- MSc degree in proteomics, protein chemistry, analytical chemistry, or gas-phase chemistry
- Documented hands-on experience with mass spectrometry-based proteomics
- Proficiency in database searching and peptide identification
- Familiarity with LC-MS/MS workflows, chromatographic methods, and sample preparation
- Desirable:
- Prior experience with negative ion mode MS
- Interest in computational proteomics workflows
- Programming or scripting skills (e.g., Python, R) for data processing and visualization
- Strong analytical mindset and ability to collaborate across disciplines
Job Description:
The PhD student will:
- Plan and conduct LC-MS/MS-based proteomics experiments, primarily in negative ion mode.
- Investigate gas-phase peptide behavior and fragmentation.
- Characterize the influence of physicochemical parameters on ionization efficiency and detectability.
- Explore the effects of different ion activation methods on peptide fragmentation.
- Contribute to structured spectral annotation for advanced data analysis.
- Present research findings in peer-reviewed publications and at international conferences.
- Complete PhD coursework (~30 ECTS) and participate in teaching and dissemination activities.
How to Apply:
Candidates must submit the following documents in PDF format:
- A letter stating interest, motivation, and qualifications (max. two pages).
- A detailed CV including personal contact information.
- Copies of diplomas (Bachelor and Master’s degrees) and transcripts.
- At least one signed reference letter (sent directly to sinerr@sdu.dk).
Applications must be sent electronically via the link “Apply now” and should be attached as three separate documents.
Last Date to Apply:
December 2, 2025, at 07:59 AM.
